STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05088.1PFAM: YCII-related domain; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: npu:Npun_R2131 DGPFAETKE family protein; PFAM: YCII-related; SPTR: DGPFAETKE family protein. (119 aa)    
Predicted Functional Partners:
AFZ05087.1
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; Tetratricopeptide repeat; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG4941 RNA polymerase sigma factor containing a TPR repeat domain; InterPro IPR014284:IPR007627:IPR013249:IPR013105; KEGG: gvi:gll3948 hypothetical protein; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; Tetratricopeptide TPR2; SPTR: Gll3948 protein; TIGRFAM: RNA polymerase sigma-70.
 
     0.877
AFZ05089.1
Hypothetical protein; COGs: COG4319 Ketosteroid isomerase homolog; KEGG: npu:Npun_R2129 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.659
AFZ05091.1
Glyoxalase/bleomycin resistance protein/dioxygenase; PFAM: 3-demethylubiquinone-9 3-methyltransferase; COGs: COG2764 conserved hypothetical protein; InterPro IPR004360; KEGG: npu:Npun_R2128 3-demethylubiquinone-9 3-methyltransferase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; SPTR: 3-demethylubiquinone-9 3-methyltransferase.
 
    0.512
AFZ05090.1
PFAM: YCII-related domain; COGs: COG3795 conserved hypothetical protein; InterPro IPR005545; KEGG: gvi:gll3947 hypothetical protein; PFAM: YCII-related; SPTR: Gll3947 protein.
 
    
0.494
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.