STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05169.1PFAM: Helicase conserved C-terminal domain; Type III restriction enzyme, res subunit; COGs: COG1061 DNA or RNA helicase of superfamily II; InterPro IPR006935:IPR001650:IPR014001; KEGG: ter:Tery_4412 type III restriction enzyme, res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; Helicase, C-terminal; SPTR: Type III restriction enzyme, res subunit. (513 aa)    
Predicted Functional Partners:
AFZ05167.1
PFAM: Protein of unknown function (DUF790); COGs: COG3372 conserved hypothetical protein; InterPro IPR008508; KEGG: ter:Tery_2122 hypothetical protein; PFAM: Protein of unknown function DUF790, endonuclease-like; SPTR: Putative uncharacterized protein.
 
 
 
 0.975
AFZ04795.1
KEGG: ter:Tery_1134 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 0.883
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
  0.868
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
    
  0.865
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.865
AFZ05354.1
KEGG: amr:AM1_3062 hypothetical protein; SPTR: Putative uncharacterized protein.
   
 0.764
AFZ08492.1
COGs: COG1199 Rad3-related DNA helicase; KEGG: ter:Tery_2699 putative ATP-dependent DNA helicase DinG; SPTR: Putative uncharacterized protein; manually curated.
   
 0.764
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
 0.761
AFZ05168.1
Hypothetical protein; PFAM: Domain of unknown function (DUF3598); KEGG: cyn:Cyan7425_1465 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.608
AFZ05632.1
PFAM: Mov34/MPN/PAD-1 family; COGs: COG1310 metal-dependent protease of the PAD1/JAB1 superfamily; InterPro IPR000555; KEGG: ter:Tery_1109 Mov34/MPN/PAD-1; PFAM: Mov34/MPN/PAD-1; SMART: Mov34/MPN/PAD-1; SPTR: Mov34/MPN/PAD-1.
    
  0.449
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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