STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpcSPhycobilin lyase, CpcU subunit; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins. (169 aa)    
Predicted Functional Partners:
cpcT-2
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.940
cpcT
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.916
cpcT-3
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
   
 0.881
AFZ06483.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit; InterPro IPR006247:IPR012128; KEGG: mar:MAE_24450 phycocyanin beta subunit; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycocyanin, beta subunit; TIGRFAM: Phycocyanin, beta subunit.
  
   
 0.799
AFZ07630.1
Allophycocyanin alpha subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyn:Cyan7425_4994 phycobilisome protein; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Allophycocyanin alpha subunit.
  
   
 0.799
AFZ07631.1
PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR006245:IPR012128; KEGG: cyt:cce_2909 allophycocyanin beta subunit; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Allophycocyanin beta subunit; TIGRFAM: Allophycocyanin, beta subunit.
  
   
 0.798
AFZ06482.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit; InterPro IPR006246:IPR012128; KEGG: cyc:PCC7424_0160 phycocyanin, alpha subunit; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycocyanin, alpha subunit; TIGRFAM: Phycocyanin, alpha subunit.
  
   
 0.796
AFZ09551.1
PFAM: Phycobilisome protein; TIGRFAM: allophycocyanin, beta subunit; InterPro IPR006245:IPR012128; KEGG: ter:Tery_3835 allophycocyanin, beta subunit; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Allophycocyanin, beta subunit; TIGRFAM: Allophycocyanin, beta subunit.
  
   
 0.787
AFZ09569.1
Allophycocyanin alpha-B subunit apoprotein; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyn:Cyan7425_1034 phycobilisome protein; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycobilisome protein.
  
   
 0.787
AFZ07632.1
Phycobilisome core linker protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
   
 0.776
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.