STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05303.1D-alanyl-D-alaninecarboxypeptidase/D-alanyl-D-al anine-endopeptidase; PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM: D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: ter:Tery_4167 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; PRIAM: Serine-type D-Ala-D-Ala carboxypeptidase; SPTR: D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; TIGRFAM: Peptidase S13, D-Ala [...] (495 aa)    
Predicted Functional Partners:
AFZ05884.1
PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: ter:Tery_1815 peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
  
  
  0.975
AFZ06395.1
PFAM: D-Ala-D-Ala carboxypeptidase 3 (S13) family; COGs: COG2027 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 4); InterPro IPR000667; KEGG: ter:Tery_4430 peptidase S13, D-Ala-D-Ala carboxypeptidase C; PFAM: Peptidase S13, D-Ala-D-Ala carboxypeptidase C; SPTR: Peptidase S13, D-Ala-D-Ala carboxypeptidase C.
  
  
  0.975
AFZ08854.1
PFAM: LD-carboxypeptidase; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: npu:Npun_R2549 peptidase U61, LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Putative uncharacterized protein.
 
  
 0.784
AFZ07038.1
PFAM: LD-carboxypeptidase; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: npu:Npun_R1150 peptidase U61, LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61, LD-carboxypeptidase A.
 
  
 0.761
AFZ08059.1
ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain; COGs: COG1376 conserved hypothetical protein; InterPro IPR005490; KEGG: ter:Tery_4950 ErfK/YbiS/YcfS/YnhG; PFAM: YkuD domain; SPTR: Putative uncharacterized protein.
     
 0.529
AFZ06516.1
ErfK/YbiS/YcfS/YnhG family protein; PFAM: L,D-transpeptidase catalytic domain; InterPro IPR005490; KEGG: cpi:Cpin_0914 ErfK/YbiS/YcfS/YnhG family protein; PFAM: YkuD domain; SPTR: Putative uncharacterized protein.
    
 0.520
AFZ05302.1
KEGG: cyj:Cyan7822_0831 NADH dehydrogenase; SPTR: Putative uncharacterized protein.
       0.513
AFZ07634.1
PFAM: Cell cycle protein; TIGRFAM: cell division protein FtsW; COGs: COG0772 Bacterial cell division membrane protein; InterPro IPR001182; KEGG: npu:Npun_R4834 cell cycle protein; PFAM: Cell cycle protein; SPTR: Putative cell division protein ftsW; Belongs to the SEDS family.
     
 0.511
AFZ05304.1
Soluble epoxide hydrolase; COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ter:Tery_2696 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; PRIAM: Soluble epoxide hydrolase; SPTR: Alpha/beta hydrolase fold.
       0.435
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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