STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05383.1PFAM: Protein of unknown function (DUF3727); Protein of unknown function (DUF1292); InterPro IPR009711; KEGG: ter:Tery_4377 hypothetical protein; PFAM: Uncharacterised protein family UPF0473; SPTR: Putative uncharacterized protein. (192 aa)    
Predicted Functional Partners:
AFZ07030.1
PFAM: Hypothetical chloroplast protein Ycf34; InterPro IPR019656; KEGG: ter:Tery_1063 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.772
AFZ09814.1
KEGG: ter:Tery_3619 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.767
AFZ07085.1
PFAM: Domain of unknown function (DUF1825); InterPro IPR014954; KEGG: ava:Ava_0927 hypothetical protein; PFAM: Protein of unknown function DUF1825; SPTR: Putative uncharacterized protein.
  
     0.766
cpcS
Phycobilin lyase, CpcU subunit; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
     0.765
AFZ10194.1
KEGG: ter:Tery_1859 transcriptional regulator AbrB; SPTR: Transcriptional regulator AbrB.
  
     0.765
psbV
Cytochrome c-550; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II.
  
     0.764
AFZ05295.1
PFAM: Protein of unknown function (DUF3110); KEGG: ter:Tery_0341 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.763
ndhO
NAD(P)H-quinone oxidoreductase subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.761
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
     0.757
AFZ07670.1
PFAM: Protein of unknown function (DUF2997); KEGG: cyj:Cyan7822_5129 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.757
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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