STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05439.1Parallel beta-helix repeat protein; PFAM: Hemolysin-type calcium-binding repeat (2 copies); COGs: COG2931 RTX toxins and related Ca2+-binding protein; InterPro IPR006626:IPR001343:IPR022441; KEGG: cme:CMH001C similar to hedgehog protein; PFAM: Haemolysin-type calcium-binding repeat; SPTR: Putative uncharacterized protein; TIGRFAM: Parallel beta-helix repeat-2. (1545 aa)    
Predicted Functional Partners:
AFZ10259.1
PFAM: HlyD family secretion protein; TIGRFAM: type I secretion membrane fusion protein, HlyD family; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: cyh:Cyan8802_2856 secretion protein HlyD family protein; PFAM: Secretion protein HlyD; SPTR: Auxiliary transport protein, MFP family.
  
    0.704
AFZ08015.1
Secretion protein HlyD family protein; COGs: COG1566 Multidrug resistance efflux pump; InterPro IPR006143; KEGG: ter:Tery_0623 secretion protein HlyD; PFAM: Secretion protein HlyD; SPTR: Secretion protein HlyD.
  
    0.606
AFZ04740.1
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; PFAM: Peptidase C39 family; ABC transporter transmembrane region; ABC transporter; Cyclic nucleotide-binding domain; TIGRFAM: type I secretion system ABC transporter, HlyB family; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR000595:IPR005074:IPR001140:IPR003439:IPR 003593; KEGG: ter:Tery_1352 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; PFAM: ABC transporter-like; ABC transporter, transmembrane domain; Cyclic nucleotide-bi [...]
 
    0.555
AFZ05437.1
PFAM: Uncharacterised protein family (UPF0104); KEGG: ter:Tery_2712 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.442
AFZ05438.1
Hypothetical protein.
       0.442
AFZ10260.1
Cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporters; PFAM: ABC transporter transmembrane region; Peptidase C39 family; ABC transporter; Cyclic nucleotide-binding domain; TIGRFAM: ABC-type bacteriocin transporter; type I secretion system ABC transporter, HlyB family; COGs: COG2274 ABC-type bacteriocin/lantibiotic exporter contain an N-terminal double-glycine peptidase domain; InterProIPR003593:IPR000595:IPR005074:IPR001140:IPR 003439; KEGG: cyc:PCC7424_3519 cyclic nucleotide-regulated ABC bacteriocin/lantibiotic exporter; PFAM: ABC transporter-like; Peptidase C39, bacterio [...]
  
  
 0.440
AFZ05436.1
Thermitase; PFAM: Hemolysin-type calcium-binding repeat (2 copies); Bacterial pre-peptidase C-terminal domain; Subtilase family; COGs: COG1404 Subtilisin-like serine protease; InterPro IPR001343:IPR007280:IPR000209; KEGG: ter:Tery_0488 peptidase S8/S53 subtilisin kexin sedolisin; PFAM: Peptidase S8/S53, subtilisin/kexin/sedolisin; Peptidase, C-terminal, archaeal/bacterial; Haemolysin-type calcium-binding repeat; PRIAM: Thermitase; SPTR: Subtilase family protein.
 
   
0.435
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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