STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05558.1Peptidoglycan-binding lysin domain protein; PFAM: LysM domain; InterPro IPR018392:IPR002482; KEGG: msv:Mesil_2795 peptidoglycan-binding lysin domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; SPTR: Peptidoglycan-binding lysin domain protein. (61 aa)    
Predicted Functional Partners:
AFZ05557.1
SCP-like extracellular; PFAM: Cysteine-rich secretory protein family; Beta/Gamma crystallin; COGs: COG2340 Uncharacterized protein with SCP/PR1 domains; InterPro IPR001064:IPR014044:IPR001283; KEGG: amr:AM1_4208 type I secretion target domain/SCP-like extracellular domain-containing protein; PFAM: CAP domain; Beta/gamma crystallin; SMART: Beta/gamma crystallin; Allergen V5/Tpx-1-related; SPTR: Putative uncharacterized protein.
       0.466
AFZ05559.1
Hypothetical protein.
       0.401
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.