STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05569.1KEGG: mar:MAE_39590 hypothetical protein; SPTR: Putative uncharacterized protein. (90 aa)    
Predicted Functional Partners:
AFZ05570.1
TIGRFAM: clan AA aspartic protease, AF_0612 family; COGs: COG5550 aspartyl protease; InterPro IPR022274; KEGG: ava:Ava_0905 hypothetical protein; SPTR: Similar to tr|Q3MEQ7|Q3MEQ7_ANAVT Hypothetical protein; TIGRFAM: Peptidase aspartic, AF0612.
       0.668
AFZ05568.1
KEGG: cyn:Cyan7425_3371 hypothetical protein; SPTR: Putative uncharacterized protein; manually curated.
       0.598
AFZ05567.1
Tetratricopeptide TPR_1 repeat-containing protein; PFAM: Tetratricopeptide repeat; InterPro IPR001440:IPR013105:IPR019734; KEGG: cyj:Cyan7822_1089 TPR repeat-containing protein; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; SMART: Tetratricopeptide repeat; SPTR: Tetratricopeptide repeat family.
       0.517
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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