STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05585.1PFAM: CpcD/allophycocyanin linker domain; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR008213; KEGG: cyc:PCC7424_5724 phycobilisome linker polypeptide; PFAM: Phycobilisome linker domain; CpcD phycobilisome linker-like; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family. (255 aa)    
Predicted Functional Partners:
AFZ05589.1
Phycocyanin; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyp:PCC8801_4516 phycobilisome protein; PFAM: Phycobilisome, alpha/beta subunit; SPTR: CpeB.
 
 
 0.992
AFZ05590.1
Phycocyanin; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyp:PCC8801_4515 phycobilisome protein; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycobilisome protein.
 
 
 0.992
cpcT
Protein of unknown function DUF1001; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
  
 0.983
cpcS-3
Phycoerythrobilin lyase CpeS; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
 
  
 0.982
AFZ05591.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155; KEGG: cyp:PCC8801_4512 PBS lyase heat domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: CpeY.
 
  
  0.979
AFZ05592.1
InterPro IPR004155; KEGG: cyp:PCC8801_4513 PBS lyase heat domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein.
 
  
 0.978
AFZ05575.1
PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155; KEGG: npu:Npun_F3804 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SPTR: PBS lyase HEAT domain protein repeat-containing protein CpeF.
  
  
  0.975
AFZ05586.1
PFAM: CpcD/allophycocyanin linker domain; Phycobilisome Linker polypeptide; InterPro IPR001297:IPR008213; KEGG: cyp:PCC8801_4529 phycobilisome linker polypeptide; PFAM: Phycobilisome linker domain; CpcD phycobilisome linker-like; SPTR: Phycobilisome linker polypeptide:CpcD phycobilisome linker-like; Belongs to the phycobilisome linker protein family.
 
  
0.958
AFZ07632.1
Phycobilisome core linker protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.938
AFZ05583.1
KEGG: cyp:PCC8801_4525 phycoerythrin-associated linker protein, CpeR; SPTR: Phycoerythrin-associated linker protein, CpeR.
    
 0.930
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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