STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ05646.1PFAM: Pentapeptide repeats (8 copies); COGs: COG1357 Uncharacterized low-complexity protein; InterPro IPR001646; KEGG: cyt:cce_0905 RfrA pentapeptide repeat-containing protein; PFAM: Pentapeptide repeat; SPTR: Putative uncharacterized protein. (298 aa)    
Predicted Functional Partners:
AFZ05377.1
PFAM: Pentapeptide repeats (8 copies); InterPro IPR001646; KEGG: ter:Tery_0401 pentapeptide repeat-containing protein; PFAM: Pentapeptide repeat; SPTR: Pentapeptide repeat.
  
     0.761
AFZ05647.1
PFAM: von Willebrand factor type A domain; Vault protein inter-alpha-trypsin; COGs: COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain; InterPro IPR013694:IPR002035:IPR006587; KEGG: cyj:Cyan7822_5287 vault protein inter-alpha-trypsin domain-containing protein; PFAM: Vault protein inter-alpha-trypsin; von Willebrand factor, type A; SMART: von Willebrand factor, type A; Vault protein inter-alpha-trypsin, metazoa; SPTR: Vault protein inter-alpha-trypsin.
       0.421
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
Server load: low (16%) [HD]