STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06131.1Urea carboxylase; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; Biotin carboxylase C-terminal domain; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, N-terminal domain; Biotin-requiring enzyme; TIGRFAM: urea carboxylase; biotin-dependent carboxylase uncharacterized domain; COGs: COG4770 Acetyl/propionyl-CoA carboxylase alpha subunit; InterProIPR014084:IPR003778:IPR005481:IPR005479:IPR 005482:IPR003833:IPR000089; KEGG: cyn:Cyan7425_2304 UreA carboxylase; PFAM: Allophanate hydrolase subunit 2; Carbamoyl-phosphate s [...] (1205 aa)    
Predicted Functional Partners:
AFZ06104.1
PFAM: Amidase; TIGRFAM: allophanate hydrolase; COGs: COG0154 Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidase; InterPro IPR014085:IPR000120; KEGG: gvi:glr0961 allophanate hydrolase; PFAM: Amidase; PRIAM: Allophanate hydrolase; SPTR: Glr0961 protein; TIGRFAM: Allophanate hydrolase.
  
 0.999
gatA
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
 0.939
ureC
PFAM: Urease alpha-subunit, N-terminal domain; Amidohydrolase family; TIGRFAM: urease, alpha subunit; COGs: COG0804 Urea amidohydrolase (urease) alpha subunit; HAMAP: Urease, alpha subunit; InterPro IPR005848:IPR011612:IPR006680; KEGG: ava:Ava_3618 urease subunit alpha; PFAM: Amidohydrolase 1; Urease alpha-subunit, N-terminal; PRIAM: Urease; SPTR: Urease subunit alpha; TIGRFAM: Urease, alpha subunit.
    
 0.936
AFZ05895.1
acetyl-CoA carboxylase, biotin carboxyl carrier protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
 
 
 0.933
ureB
PFAM: Urease beta subunit; TIGRFAM: urease, beta subunit; COGs: COG0832 Urea amidohydrolase (urease) beta subunit; HAMAP: Urease, beta subunit; InterPro IPR002019; KEGG: npu:Npun_F0824 urease subunit beta; PFAM: Urease, beta subunit; PRIAM: Urease; SPTR: Urease subunit beta; TIGRFAM: Urease, beta subunit; Belongs to the urease beta subunit family.
    
 0.931
AFZ04741.1
Secretion protein HlyD family protein; InterPro IPR006143; KEGG: ter:Tery_1351 chromosome segregation ATPase-like protein; PFAM: Secretion protein HlyD; SPTR: Chromosome segregation ATPase-like protein.
  
 
 0.922
ureA
PFAM: Urease, gamma subunit; TIGRFAM: urease, gamma subunit; COGs: COG0831 Urea amidohydrolase (urease) gamma subunit; HAMAP: Urease, gamma subunit; InterPro IPR012010:IPR002026; KEGG: npu:Npun_F0823 urease subunit gamma; PFAM: Urease, alpha/gamma subunit; PRIAM: Urease; SPTR: Urease subunit gamma; TIGRFAM: Urease, alpha/gamma subunit; Belongs to the urease gamma subunit family.
     
 0.911
AFZ06109.1
PFAM: Domain of unknown function (DUF1989); TIGRFAM: urea carboxylase-associated protein 1; COGs: COG3665 conserved hypothetical protein; InterPro IPR017791:IPR018959; KEGG: cyn:Cyan7425_2305 UreA carboxylase-associated protein 1; PFAM: Domain of unknown function DUF1989; SPTR: Urea carboxylase-associated protein 1; TIGRFAM: Urea carboxylase-associated protein 1.
   
 0.888
AFZ06108.1
Urea carboxylase-associated protein 2; PFAM: Domain of unknown function (DUF1989); TIGRFAM: urea carboxylase-associated protein 1; urea carboxylase-associated protein 2; COGs: COG3665 conserved hypothetical protein; InterPro IPR017792:IPR018959; KEGG: cyn:Cyan7425_2306 UreA carboxylase-associated protein 2; PFAM: Domain of unknown function DUF1989; SPTR: Urea carboxylase-associated protein 2; TIGRFAM: Urea carboxylase-associated protein 2.
   
 0.887
accD
Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family.
 
 0.880
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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