STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06185.1Auxin Efflux Carrier; PFAM: Membrane transport protein; COGs: COG0679 permease; InterPro IPR004776; KEGG: ava:Ava_3581 auxin efflux carrier; PFAM: Auxin efflux carrier; SPTR: Putative Transporter, AEC family. (328 aa)    
Predicted Functional Partners:
AFZ07688.1
Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); PFAM: Malic enzyme, NAD binding domain; Malic enzyme, N-terminal domain; ACT domain; COGs: COG0281 Malic enzyme; InterPro IPR002912:IPR012301:IPR012302; KEGG: npu:Npun_F1023 malic enzyme, NAD-binding; PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; Amino acid-binding ACT; PRIAM: Malate dehydrogenase (oxaloacetate-decarboxylating) (NADP(+)); SMART: Malic enzyme, NAD-binding; SPTR: Malate dehydrogenase.
  
  
 0.706
AFZ06186.1
KEGG: npu:Npun_F4611 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.484
AFZ06184.1
Multi-sensor signal transduction multi-kinase; PFAM: Protein kinase domain; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; COGs: COG3899 ATPase; InterProIPR002290:IPR020635:IPR003018:IPR003594:IPR 017442; KEGG: ava:Ava_3535 serine/threonine protein kinase and signal transduction histidine kinase (STHK) with GAF sensor; PFAM: ATPase-like, ATP-binding domain; Serine/threonine-protein kinase-like domain; GAF; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, catalytic domain; GAF; ATPase-like, ATP-binding d [...]
       0.468
AFZ06479.1
PFAM: CpcD/allophycocyanin linker domain; InterPro IPR008213; KEGG: tel:tsr1960 phycocyanin-associated 7.8kDa rod linker protein; PFAM: CpcD phycobilisome linker-like; SPTR: CpcD.
  
     0.420
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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