STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06307.1Rifampin ADP-ribosylating transferase; PFAM: DNA/RNA tunnel of bacterial DNA dependent RNA polymerase; KEGG: chu:CHU_2313 rifampin ADP-ribosylating transferase; SPTR: Rifampin ADP-ribosylating transferase. (144 aa)    
Predicted Functional Partners:
AFZ08143.1
Chloramphenicol O-acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: syn:sll1900 acetyltransferase; PRIAM: Chloramphenicol O-acetyltransferase; SPTR: Streptogramin A acetyltransferase.
      0.872
AFZ06308.1
Hypothetical protein; KEGG: geo:Geob_2134 polysaccharide biosynthesis protein CapD.
       0.689
AFZ06309.1
PFAM: Phycobilisome protein; Phycobilisome Linker polypeptide; InterPro IPR012128:IPR001297; KEGG: npu:Npun_R4843 phycobilisome linker polypeptide ApcE; PFAM: Phycobilisome linker domain; Phycobilisome, alpha/beta subunit; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
       0.440
AFZ06310.1
SPTR: Cobalt import ATP-binding protein CbiO 2.
       0.414
AFZ09968.1
Thioredoxin reductase; PFAM: Pyridine nucleotide-disulphide oxidoreductase; Thioredoxin; TIGRFAM: thioredoxin-disulfide reductase; COGs: COG0492 Thioredoxin reductase; InterPro IPR005982:IPR013027:IPR013766; KEGG: ana:all0737 thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Thioredoxin domain; PRIAM: Thioredoxin-disulfide reductase., Protein-disulfide reductase; SPTR: Thioredoxin reductase; TIGRFAM: Thioredoxin reductase.
     
 0.402
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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