STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06481.1PFAM: Phycobilisome Linker polypeptide; CpcD/allophycocyanin linker domain; InterPro IPR001297:IPR008213; KEGG: cyn:Cyan7425_1695 phycobilisome linker polypeptide; PFAM: Phycobilisome linker domain; CpcD phycobilisome linker-like; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family. (271 aa)    
Predicted Functional Partners:
AFZ06479.1
PFAM: CpcD/allophycocyanin linker domain; InterPro IPR008213; KEGG: tel:tsr1960 phycocyanin-associated 7.8kDa rod linker protein; PFAM: CpcD phycobilisome linker-like; SPTR: CpcD.
 
 
 0.995
AFZ06482.1
Phycocyanin, alpha subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, alpha subunit; InterPro IPR006246:IPR012128; KEGG: cyc:PCC7424_0160 phycocyanin, alpha subunit; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycocyanin, alpha subunit; TIGRFAM: Phycocyanin, alpha subunit.
 
 
 0.995
AFZ06483.1
Phycocyanin, beta subunit; PFAM: Phycobilisome protein; TIGRFAM: phycocyanin, beta subunit; InterPro IPR006247:IPR012128; KEGG: mar:MAE_24450 phycocyanin beta subunit; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycocyanin, beta subunit; TIGRFAM: Phycocyanin, beta subunit.
 
 
 0.994
AFZ06478.1
PBS lyase HEAT domain protein repeat-containing protein; PFAM: PBS lyase HEAT-like repeat; COGs: COG1413 FOG: HEAT repeat; InterPro IPR004155; KEGG: ter:Tery_5047 heat repeat-containing PBS lyase; PFAM: PBS lyase HEAT-like repeat; SMART: PBS lyase HEAT-like repeat; SPTR: HEAT repeat-containing PBS lyase.
 
  
 0.983
AFZ06477.1
PFAM: PBS lyase HEAT-like repeat; InterPro IPR004155:IPR000357; KEGG: ter:Tery_5046 heat domain-containing protein; PFAM: PBS lyase HEAT-like repeat; HEAT; SPTR: Heat domain-containing protein.
 
  
 0.982
AFZ07539.1
PFAM: Phycobilisome Linker polypeptide; InterPro IPR001297; KEGG: cyh:Cyan8802_1383 phycobilisome linker polypeptide; PFAM: Phycobilisome linker domain; SPTR: Phycobilisome linker polypeptide; Belongs to the phycobilisome linker protein family.
  
 
0.979
AFZ06480.1
PFAM: Phycobilisome Linker polypeptide; CpcD/allophycocyanin linker domain; InterPro IPR001297:IPR008213; KEGG: cyh:Cyan8802_3043 phycobilisome linker polypeptide; PFAM: Phycobilisome linker domain; CpcD phycobilisome linker-like; SPTR: Phycobilisome 32.1 kDa linker polypeptide,phycocyanin-associated, rod; Belongs to the phycobilisome linker protein family.
 
 
0.970
AFZ07632.1
Phycobilisome core linker protein; Rod linker protein, associated with allophycocyanin. Linker polypeptides determine the state of aggregation and the location of the disk-shaped phycobiliprotein units within the phycobilisome and modulate their spectroscopic properties in order to mediate a directed and optimal energy transfer.
  
 
 
 0.940
AFZ05590.1
Phycocyanin; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyp:PCC8801_4515 phycobilisome protein; PFAM: Phycobilisome, alpha/beta subunit; SPTR: Phycobilisome protein.
 
 
 
 0.901
AFZ05589.1
Phycocyanin; PFAM: Phycobilisome protein; InterPro IPR012128; KEGG: cyp:PCC8801_4516 phycobilisome protein; PFAM: Phycobilisome, alpha/beta subunit; SPTR: CpeB.
 
 
 
 0.898
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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