STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06495.1KEGG: ava:Ava_4934 transmembrane transcriptional regulator (anti-sigma factor); SPTR: Putative Predicted transmembrane transcriptional regulator (Anti-sigma factor). (201 aa)    
Predicted Functional Partners:
AFZ06496.1
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR014284:IPR007627:IPR013249; KEGG: npu:Npun_F4153 RNA polymerase sigma factor RpoE; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; SPTR: RNA polymerase sigma factor RpoE; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
 
 
 0.840
AFZ08282.1
KEGG: ana:alr3583 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
 0.803
AFZ05239.1
KEGG: cyn:Cyan7425_2084 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.774
AFZ05381.1
GCN5-related N-acetyltransferase; PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: ter:Tery_4380 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: Putative uncharacterized protein.
  
     0.774
AFZ05886.1
COGs: COG1837 RNA-binding protein (contains KH domain); KEGG: cyn:Cyan7425_2771 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.774
AFZ05785.1
PFAM: Domain of unknown function (DUF1830); InterPro IPR014964; KEGG: npu:Npun_F3903 hypothetical protein; PFAM: Protein of unknown function DUF1830; SPTR: Putative uncharacterized protein.
  
     0.768
AFZ06182.1
KEGG: naz:Aazo_1899 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.768
AFZ08751.1
PFAM: Protein of unknown function (DUF1257); InterPro IPR009666; KEGG: ava:Ava_4766 hypothetical protein; PFAM: Uncharacterised protein family Ycf35; SPTR: Putative uncharacterized protein.
  
     0.768
AFZ07514.1
PFAM: Domain of unknown function (DUF1830); InterPro IPR014964; KEGG: amr:AM1_4372 hypothetical protein; PFAM: Protein of unknown function DUF1830; SPTR: Putative uncharacterized protein.
  
     0.767
AFZ07885.1
KEGG: ava:Ava_4879 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.767
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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