STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06712.1GTP-binding protein HSR1-related protein; PFAM: GTPase of unknown function; Domain of unknown function (DUF697); TIGRFAM: small GTP-binding protein domain; COGs: COG1160 GTPase; InterPro IPR002917; KEGG: ter:Tery_0499 small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; SPTR: Small GTP-binding protein. (482 aa)    
Predicted Functional Partners:
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
   
  
 0.723
gpsA
PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; COGs: COG0240 Glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase, NAD-dependent; InterPro IPR011128:IPR006109:IPR006168; KEGG: syp:SYNPCC7002_A2853 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; PFAM: Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal; Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal; SPTR: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; Belongs to the NAD-dependent glycerol-3-phosphate d [...]
  
  
 0.694
AFZ05507.1
KEGG: ter:Tery_2373 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.673
AFZ06448.1
KEGG: npu:Npun_R4248 hypothetical protein; SPTR: Putative uncharacterized protein.
  
   
 0.638
panC/cmk
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. In the N-terminal section; belongs to the pantothenate synthetase family.
  
  
 0.632
AFZ09799.1
PFAM: UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: npu:Npun_F4439 UvrD/REP helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: Putative uncharacterized protein.
  
   
 0.616
AFZ08794.1
PFAM: Protein of unknown function (DUF3038); KEGG: ter:Tery_0436 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.584
AFZ09234.1
PFAM: Protein of unknown function (DUF3086); KEGG: ava:Ava_1685 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.577
AFZ08039.1
GTP-binding protein TypA; PFAM: Elongation factor Tu domain 2; Elongation factor G C-terminus; Elongation factor Tu GTP binding domain; TIGRFAM: GTP-binding protein TypA/BipA; small GTP-binding protein domain; COGs: COG1217 membrane GTPase involved in stress response; InterProIPR005225:IPR006298:IPR000795:IPR004161:IPR 000640; KEGG: cyn:Cyan7425_1716 GTP-binding protein TypA; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; SPTR: GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; [...]
  
  
 0.573
AFZ07474.1
KEGG: ter:Tery_1607 type IV pilus assembly protein PilO; SPTR: Putative Type IV pilus assembly protein PilO.
  
     0.570
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.