STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06801.1Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR001959:IPR010095; KEGG: ana:all5207 transposase; PFAM: Transposase, probable, IS891/IS1136/IS1341; Transposase, IS605 OrfB, C-terminal; SPTR: Transposase; TIGRFAM: Transposase, IS605 OrfB, C-terminal. (372 aa)    
Predicted Functional Partners:
AFZ06800.1
RNA-directed DNA polymerase (Reverse transcriptase); PFAM: HNH endonuclease; Reverse transcriptase (RNA-dependent DNA polymerase); Group II intron, maturase-specific domain; COGs: COG3344 Retron-type reverse transcriptase; InterPro IPR000477:IPR013597:IPR002711; KEGG: ter:Tery_4731 RNA-directed DNA polymerase (reverse transcriptase); PFAM: Reverse transcriptase; Group II intron, maturase-specific; HNH endonuclease; SPTR: Putative uncharacterized protein.
       0.773
AFZ06802.1
Protein of unknown function DUF318, transmembrane; PFAM: Predicted permease; COGs: COG0701 permease; InterPro IPR005524; KEGG: ana:all1509 hypothetical protein; PFAM: Protein of unknown function DUF318, transmembrane; SPTR: All1509 protein.
       0.501
AFZ05853.1
Transposase, IS605 OrfB family; PFAM: Putative transposase DNA-binding domain; Probable transposase; TIGRFAM: transposase, IS605 OrfB family, central region; transposase, putative, N-terminal domain; COGs: COG0675 Transposase and inactivated derivatives; InterPro IPR010095:IPR001959; KEGG: cyc:PCC7424_5354 transposase, family IS1341; PFAM: Transposase, IS605 OrfB, C-terminal; Transposase, probable, IS891/IS1136/IS1341; SPTR: Transposase, family IS1341; TIGRFAM: Transposase, IS605 OrfB, C-terminal.
  
     0.421
AFZ06799.1
KEGG: sli:Slin_0031 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.417
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.