STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06891.1PFAM: Bacterial type II secretion system protein F domain; COGs: COG1459 Type II secretory pathway component PulF; InterPro IPR018076; KEGG: ter:Tery_1745 type II secretion system protein; PFAM: Type II secretion system F domain; SPTR: Type II secretion system protein. (376 aa)    
Predicted Functional Partners:
AFZ06893.1
PFAM: GSPII_E N-terminal domain; Type II/IV secretion system protein; COGs: COG2804 Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB; InterPro IPR007831:IPR001482; KEGG: ter:Tery_1748 type II secretion system protein E; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; SPTR: Type II secretion system protein E.
 
 0.984
AFZ07472.1
PFAM: Competence protein A; TIGRFAM: type IV pilus assembly protein PilM; COGs: COG4972 Tfp pilus assembly protein ATPase PilM; InterPro IPR005883:IPR003494; KEGG: ter:Tery_1605 type IV pilus assembly protein PilM; SMART: Cell division protein FtsA domain; SPTR: Type IV pilus assembly protein PilM; TIGRFAM: Type IV pilus assembly protein PilM.
 
 
 
 0.949
AFZ06892.1
Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321:IPR003593; KEGG: ter:Tery_1747 twitching motility protein; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching motility protein; TIGRFAM: Pilus retraction protein PilT.
  
 0.929
AFZ05327.1
PHA accumulation regulator DNA-binding protein; PFAM: Prokaryotic N-terminal methylation motif; TIGRFAM: prepilin-type N-terminal cleavage/methylation domain; InterPro IPR012902; KEGG: ter:Tery_2388 PHA accumulation regulator DNA-binding-like; SPTR: General secretion pathway protein H.
 
  
 0.914
AFZ09112.1
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.914
AFZ07828.1
Hypothetical protein; PFAM: GSPII_E N-terminal domain; KEGG: npu:Npun_F2747 hypothetical protein; SPTR: Putative uncharacterized protein.
  
 
 0.886
AFZ07475.1
PFAM: Secretin and TonB N terminus short domain; Bacterial type II/III secretion system short domain; Localisation of periplasmic protein complexes; Bacterial type II and III secretion system protein; COGs: COG4796 Type II secretory pathway component HofQ; InterPro IPR011662:IPR005644:IPR004846; KEGG: ter:Tery_1609 type II and III secretion system protein; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; SMART: Secretin/TonB, short N-terminal; SPTR: Type II and III secretion system protein.
 
 
 
 0.848
AFZ06545.1
Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR006321:IPR001482; KEGG: ter:Tery_4672 twitching motility protein; PFAM: Type II secretion system protein E; SPTR: Twitching motility protein; TIGRFAM: Pilus retraction protein PilT.
  
 0.836
AFZ06863.1
Twitching motility protein; PFAM: Type II/IV secretion system protein; TIGRFAM: pilus retraction protein PilT; COGs: COG2805 Tfp pilus assembly protein pilus retraction ATPase PilT; InterPro IPR001482:IPR006321:IPR003593; KEGG: cyb:CYB_0187 twitching mobility protein PilT; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; SPTR: Twitching mobility protein; TIGRFAM: Pilus retraction protein PilT.
  
 0.815
AFZ07473.1
PFAM: Fimbrial assembly protein (PilN); InterPro IPR007813; KEGG: ter:Tery_1606 fimbrial assembly; PFAM: Fimbrial assembly; SPTR: Putative Fimbrial assembly protein.
   
 
 0.792
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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