STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06931.1beta-Ig-H3/fasciclin; PFAM: Fasciclin domain; COGs: COG2335 Secreted and surface protein containing fasciclin-like repeats; InterPro IPR000782; KEGG: ava:Ava_2167 beta-Ig-H3/fasciclin; PFAM: FAS1 domain; SMART: FAS1 domain; SPTR: Beta-Ig-H3/fasciclin. (138 aa)    
Predicted Functional Partners:
AFZ06522.1
PFAM: CO2 hydration protein (ChpXY); TIGRFAM: CO2 hydration protein; InterPro IPR010220; KEGG: naz:Aazo_4081 CO2 hydration protein; PFAM: CO2 hydration; SPTR: CO2 hydration protein; TIGRFAM: CO2 hydration.
   
 
 0.750
ndhH
NADH dehydrogenase subunit D; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
    
 
 0.745
AFZ09417.1
PFAM: CO2 hydration protein (ChpXY); TIGRFAM: CO2 hydration protein; InterPro IPR010220; KEGG: cyj:Cyan7822_2890 CO2 hydration protein; PFAM: CO2 hydration; SPTR: CO2 hydration protein; TIGRFAM: CO2 hydration.
    
 
 0.471
AFZ06932.1
Protein of unknown function DUF2358; PFAM: Uncharacterized conserved protein (DUF2358); InterPro IPR018790; KEGG: ter:Tery_4691 hypothetical protein; PFAM: Protein of unknown function DUF2358; SPTR: Putative uncharacterized protein.
       0.465
AFZ06248.1
KEGG: ava:Ava_4792 hypothetical protein; SPTR: Putative uncharacterized protein.
 
      0.429
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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