STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ06938.1PFAM: LTXXQ motif; InterPro IPR012899; KEGG: cyh:Cyan8802_4487 protein of unknown function Spy-related; PFAM: Uncharacterised protein domain Spy-rel; SPTR: Putative uncharacterized protein. (161 aa)    
Predicted Functional Partners:
AFZ06940.1
RNA polymerase, sigma subunit, ECF family; PFAM: Sigma-70, region 4; Sigma-70 region 2; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; COGs: COG1595 DNA-directed RNA polymerase specialized sigma subunit sigma24 homolog; InterPro IPR007627:IPR007630:IPR014284; KEGG: cyc:PCC7424_3296 RNA polymerase sigma factor; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; SPTR: RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70; Belongs to the sigma-70 factor family. ECF subfamily.
 
  
 0.841
AFZ06939.1
KEGG: cyj:Cyan7822_0317 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.743
AFZ06927.1
PFAM: Domain of unknown function (DUF1816); InterPro IPR014945; KEGG: cyc:PCC7424_1761 hypothetical protein; PFAM: Protein of unknown function DUF1816; SPTR: Putative uncharacterized protein.
  
     0.678
AFZ05653.1
PFAM: Tetratricopeptide repeat; InterPro IPR001440:IPR019734; KEGG: ava:Ava_3507 protein prenyltransferase, alpha subunit; PFAM: Tetratricopeptide TPR-1; SMART: Tetratricopeptide repeat; SPTR: Putative uncharacterized protein.
  
     0.638
AFZ07499.1
KEGG: ana:alr1687 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.629
AFZ07200.1
Putative signal transduction protein with Nacht domain; PFAM: NACHT domain; COGs: COG5635 NTPase (NACHT family); InterPro IPR004155:IPR003593; KEGG: ana:all3892 hypothetical protein; PFAM: PBS lyase HEAT-like repeat; SMART: ATPase, AAA+ type, core; PBS lyase HEAT-like repeat; SPTR: Putative uncharacterized protein.
  
     0.618
AFZ07089.1
KEGG: mar:MAE_38360 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.572
AFZ10047.1
PFAM: Protein of unknown function (DUF2605); InterPro IPR019728; KEGG: ter:Tery_3788 hypothetical protein; PFAM: Protein of unknown function DUF2605; SPTR: Putative uncharacterized protein.
  
     0.569
psbX
Photosystem II reaction center X protein; Involved in the binding and/or turnover of quinones at the Q(B) site of Photosystem II.
  
     0.534
AFZ08379.1
KEGG: cyj:Cyan7822_4345 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.524
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.