STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ07023.1PFAM: Protein of unknown function (DUF2459); TIGRFAM: conserved hypothetical protein; InterPro IPR011727; KEGG: cyn:Cyan7425_2319 hypothetical protein; PFAM: Conserved hypothetical protein CHP02117; SPTR: Putative uncharacterized protein; TIGRFAM: Conserved hypothetical protein CHP02117. (225 aa)    
Predicted Functional Partners:
AFZ07024.1
Protein of unknown function DUF187; PFAM: Uncharacterised BCR, COG1649; COGs: COG1649 conserved hypothetical protein; InterPro IPR003790; KEGG: ter:Tery_0133 hypothetical protein; PFAM: Protein of unknown function DUF187; SPTR: Putative uncharacterized protein.
       0.746
AFZ04942.1
PFAM: KWG Leptospira; InterPro IPR011647; KEGG: ate:Athe_0718 KWG repeat protein; PFAM: KWG Leptospira; SPTR: KWG repeat domain protein.
  
     0.510
hisA
1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis protein; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; COGs: COG0106 Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase; HAMAP: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; InterPro IPR006062:IPR006063:IPR023016; KEGG: cyc:PCC7424_4950 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthe [...]
       0.480
AFZ06140.1
PFAM: KWG Leptospira; InterPro IPR011647; KEGG: ana:all4040 hypothetical protein; PFAM: KWG Leptospira; SPTR: All4040 protein.
  
     0.465
AFZ07025.1
PFAM: Serpin (serine protease inhibitor); COGs: COG4826 Serine protease inhibitor; InterPro IPR000215; KEGG: cyj:Cyan7822_3368 proteinase inhibitor I4 serpin; PFAM: Protease inhibitor I4, serpin; SMART: Protease inhibitor I4, serpin; SPTR: Proteinase inhibitor I4 serpin; Belongs to the serpin family.
       0.403
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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