STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ07037.1Carotenoid oxygenase; PFAM: Retinal pigment epithelial membrane protein; COGs: COG3670 Lignostilbene-alpha beta-dioxygenase; InterPro IPR004294; KEGG: npu:Npun_R0776 carotenoid oxygenase; PFAM: Carotenoid oxygenase; SPTR: Carotenoid oxygenase. (477 aa)    
Predicted Functional Partners:
ccsB
Cytochrome c biogenesis protein ccs1; Required during biogenesis of c-type cytochromes (cytochrome c6 and cytochrome f) at the step of heme attachment.
      
 0.570
AFZ07039.1
Methyltransferase type 11; PFAM: Methyltransferase domain; COGs: COG2226 Methylase involved in ubiquinone/menaquinone biosynthesis; InterPro IPR013216; KEGG: npu:Npun_F6389 methyltransferase type 11; PFAM: Methyltransferase type 11; SPTR: Methyltransferase type 11.
 
     0.529
AFZ07038.1
PFAM: LD-carboxypeptidase; COGs: COG1619 conserved hypothetical protein; InterPro IPR003507; KEGG: npu:Npun_R1150 peptidase U61, LD-carboxypeptidase A; PFAM: Peptidase S66, LD-carboxypeptidase A; SPTR: Peptidase U61, LD-carboxypeptidase A.
       0.497
AFZ09876.1
Methyltransferase; PFAM: Uncharacterized conserved protein (DUF2260); TIGRFAM: probable methyltransferase; COGs: COG4301 conserved hypothetical protein; InterPro IPR017804:IPR019257; KEGG: ava:Ava_4281 hypothetical protein; PFAM: Protein of unknown function DUF2260; SPTR: Putative uncharacterized protein; TIGRFAM: Methyltransferase-like.
  
   
 0.474
AFZ07554.1
KEGG: ana:alr4045 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.432
AFZ04701.1
Forkhead-associated protein; PFAM: FHA domain; InterPro IPR000253; KEGG: tel:tll1487 hypothetical protein; PFAM: Forkhead-associated (FHA) domain; SMART: Forkhead-associated (FHA) domain; SPTR: Putative uncharacterized protein.
  
     0.410
AFZ04909.1
KEGG: cyj:Cyan7822_3250 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.405
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.