STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ07061.1PFAM: Isoprenylcysteine carboxyl methyltransferase (ICMT) family; COGs: COG2020 Putative protein-S-isoprenylcysteine methyltransferase; InterPro IPR007269; KEGG: syn:slr1182 hypothetical protein; PFAM: Isoprenylcysteine carboxyl methyltransferase; SPTR: Slr1182 protein. (171 aa)    
Predicted Functional Partners:
AFZ05638.1
PFAM: Ras family; TIGRFAM: small GTP-binding protein domain; COGs: COG1100 GTPase SAR1 and related small G protein; InterPro IPR013684:IPR005225:IPR003577:IPR003579; KEGG: cyt:cce_4708 putative small GTP-binding protein; PFAM: Mitochondrial Rho-like; SMART: Ras small GTPase, Rab type; Ras small GTPase, Ras type; SPTR: Small GTP-binding protein; TIGRFAM: Small GTP-binding protein.
    
 0.728
AFZ05368.1
KEGG: cyc:PCC7424_1131 hypothetical protein; SPTR: Putative uncharacterized protein.
  
    0.472
AFZ07060.1
NADP-dependent oxidoreductase domain protein; PFAM: Aldo/keto reductase family; COGs: COG0667 oxidoreductase (related to aryl-alcohol dehydrogenase); InterPro IPR023210; KEGG: npu:Npun_R4516 aldo/keto reductase; PFAM: NADP-dependent oxidoreductase domain; SPTR: Aldo/keto reductase.
       0.469
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.459
AFZ07138.1
PFAM: Peptidase C39 family; InterPro IPR005074; KEGG: mmg:MTBMA_c00490 peptidase; PFAM: Peptidase C39, bacteriocin processing; SPTR: Putative uncharacterized protein.
 
     0.451
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.