STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ07697.1PFAM: Protein of unknown function (DUF1800); COGs: COG5267 conserved hypothetical protein; InterPro IPR014917; KEGG: ter:Tery_4978 hypothetical protein; PFAM: Protein of unknown function DUF1800; SPTR: Putative uncharacterized protein. (520 aa)    
Predicted Functional Partners:
AFZ07696.1
PFAM: Protein of unknown function (DUF1501); COGs: COG4102 conserved hypothetical protein; InterPro IPR010869; KEGG: ter:Tery_4977 twin-arginine translocation pathway signal; PFAM: Protein of unknown function DUF1501; SPTR: Putative uncharacterized protein.
     0.938
AFZ07698.1
InterPro IPR013105; KEGG: ana:all2573 hypothetical protein; PFAM: Tetratricopeptide TPR2; SPTR: All2573 protein.
       0.548
AFZ09274.1
PFAM: DNA/RNA non-specific endonuclease; COGs: COG1864 DNA/RNA endonuclease G NUC1; InterPro IPR001604:IPR020821; KEGG: cyj:Cyan7822_6035 YD repeat-containing protein; PFAM: DNA/RNA non-specific endonuclease; SMART: DNA/RNA non-specific endonuclease; Extracellular Endonuclease, subunit A; SPTR: YD repeat protein.
  
     0.421
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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