STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ07990.1Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (171 aa)    
Predicted Functional Partners:
AFZ04827.1
Condensin subunit ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
 
 
 0.997
AFZ07991.1
KEGG: ava:Ava_2412 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.799
smc
Condensin subunit Smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
 
 
 
 0.771
panC/cmk
Pantothenate synthetase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. In the N-terminal section; belongs to the pantothenate synthetase family.
  
  
 0.715
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
 
     0.660
AFZ07423.1
KEGG: ter:Tery_1229 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.631
AFZ05206.1
Pseudouridine synthase Rsu; PFAM: RNA pseudouridylate synthase; S4 domain; TIGRFAM: pseudouridine synthase; COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR000748:IPR002942:IPR006145; KEGG: ter:Tery_1293 ribosomal large subunit pseudouridine synthase B; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; SMART: RNA-binding S4; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.598
AFZ06579.1
Pseudouridine synthase Rsu; PFAM: RNA pseudouridylate synthase; TIGRFAM: pseudouridine synthase; COGs: COG1187 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthase; InterPro IPR000748:IPR006145; KEGG: ter:Tery_2403 pseudouridine synthase, Rsu; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; SPTR: Pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA/RluB/E/F; Belongs to the pseudouridine synthase RsuA family.
  
  
 0.598
AFZ09556.1
GTP-binding protein HSR1-related protein; PFAM: GTPase of unknown function; Domain of unknown function (DUF697); TIGRFAM: small GTP-binding protein domain; COGs: COG1160 GTPase; InterPro IPR002917; KEGG: ana:alr0904 hypothetical protein; PFAM: GTP-binding protein, HSR1-related; SPTR: Small GTP-binding protein.
 
  
 0.553
AFZ07453.1
PFAM: Protein of unknown function (DUF561); InterPro IPR007570; KEGG: ava:Ava_0898 hypothetical protein; PFAM: Uncharacterised protein family Ycf23; SPTR: Putative uncharacterized protein.
 
     0.506
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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