STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ08035.1WD-40-like beta propeller repeat-containing protein; PFAM: WD40-like Beta Propeller Repeat; COGs: COG0823 Periplasmic component of the Tol biopolymer transport system; InterPro IPR011659; KEGG: amr:AM1_B0094 WD-40-like beta propeller repeat-containing protein; SPTR: WD40-like Beta Propeller. (254 aa)    
Predicted Functional Partners:
AFZ04995.1
OmpA/MotB domain protein; PFAM: Putative phospholipid-binding domain; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR007055:IPR006665; KEGG: cyt:cce_4707 hypothetical protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Transport-associated; SPTR: Putative uncharacterized protein.
  
 
 0.564
AFZ09446.1
TonB family protein; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain; InterPro IPR006260; KEGG: cyn:Cyan7425_2420 TonB family protein; PFAM: TonB, C-terminal; SPTR: TonB family protein; TIGRFAM: TonB, C-terminal; manually curated.
   
 
 0.546
AFZ05637.1
OmpA/MotB domain protein; PFAM: Putative phospholipid-binding domain; OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR007055:IPR006665; KEGG: cyt:cce_4707 hypothetical protein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; Transport-associated; SPTR: Putative uncharacterized protein.
  
 
 0.535
AFZ08798.1
OmpA/MotB domain protein; PFAM: OmpA family; COGs: COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)protein; InterPro IPR006665; KEGG: ter:Tery_0311 OmpA/MotB; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; SPTR: Putative Outer membrane protein F.
  
 
 0.535
AFZ04764.1
KEGG: npu:Npun_F3631 hypothetical protein; SPTR: Putative uncharacterized protein.
 
 
   0.446
AFZ08036.1
Hypothetical protein; KEGG: pcs:Pc22g08500 Pc22g08500; SPTR: Pc22g08500 protein.
       0.419
rlpA
Rare lipoprotein A; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
  
 
 0.401
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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