STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ08080.1PFAM: Bacterial regulatory proteins, tetR family; COGs: COG1309 Transcriptional regulator; InterPro IPR001647; KEGG: ava:Ava_0602 TetR family transcriptional regulator; PFAM: Transcription regulator, TetR-like, DNA-binding, bacterial/archaeal; SPTR: Transcriptional regulator. (203 aa)    
Predicted Functional Partners:
AFZ08079.1
TIGRFAM: ABC exporter membrane fusion protein, DevB family; InterPro IPR014315; KEGG: ana:alr4280 hypothetical protein; SPTR: Putative uncharacterized protein; TIGRFAM: ABC transporter membrane fusion protein, DevB type.
 
   
 0.755
AFZ08078.1
DevC protein; PFAM: Predicted permease; TIGRFAM: DevC protein; COGs: COG0577 ABC-type antimicrobial peptide transport system permease component; InterPro IPR005891:IPR003838; KEGG: npu:Npun_F3599 DevC protein; PFAM: Domain of unknown function DUF214, ABC transporter permease; SPTR: Putative uncharacterized protein; TIGRFAM: DevC protein.
 
   
 0.556
AFZ08051.1
KEGG: ter:Tery_0638 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.486
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
   
    0.477
AFZ05189.1
COGs: COG0596 hydrolase or acyltransferase (alpha/beta hydrolase superfamily); InterPro IPR000073; KEGG: ter:Tery_3526 alpha/beta hydrolase fold; PFAM: Alpha/beta hydrolase fold-1; SPTR: Alpha/beta hydrolase fold protein.
  
     0.447
AFZ10308.1
KEGG: ter:Tery_0603 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.442
AFZ05437.1
PFAM: Uncharacterised protein family (UPF0104); KEGG: ter:Tery_2712 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.439
AFZ09704.1
GAF sensor hybrid histidine kinase; PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; Response regulator receiver domain; His Kinase A (phosphoacceptor) domain; COGs: COG0642 Signal transduction histidine kinase; InterProIPR003660:IPR003018:IPR003661:IPR003594:IPR 001789; KEGG: ava:Ava_4696 GAF sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain; GAF; HAMP linker domain; Signal transduction response regulator, receiver domain; SMART: ATPase-like, ATP-bindin [...]
    
 
 0.405
AFZ08604.1
Multi-sensor hybrid histidine kinase; PFAM: CBS domain; Response regulator receiver domain; GAF domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain; PAS fold; Hpt domain; TIGRFAM: PAS domain S-box; COGs: COG0642 Signal transduction histidine kinase; InterProIPR000014:IPR000644:IPR001610:IPR003018:IPR 003661:IPR003594:IPR001789:IPR013655:IPR013767:IPR008207; KEGG: ter:Tery_4447 multi-sensor hybrid histidine kinase; PFAM: ATPase-like, ATP-binding domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domai [...]
    
 
 0.404
AFZ09460.1
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); PFAM: EAL domain; CBS domain; GGDEF domain; PAS fold; TIGRFAM: PAS domain S-box; diguanylate cyclase (GGDEF) domain; COGs: COG2200 FOG: EAL domain; InterProIPR000014:IPR000160:IPR000644:IPR001610:IPR 001633:IPR013767; KEGG: npu:Npun_F5467 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); PFAM: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAS fold; Cystathionine beta-synthase, core; SMART: Diguanylate phosphodiesterase, EAL domain; Diguanylate cyclase, predicted; PAC motif; PA [...]
   
 
 0.404
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.