STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ08138.1PFAM: Peptidase family M28; COGs: COG2234 aminopeptidase; InterPro IPR007484; KEGG: gbm:Gbem_0054 peptidase M28 family peptidase; PFAM: Peptidase M28; SPTR: Peptidase, M28 family. (344 aa)    
Predicted Functional Partners:
AFZ08137.1
PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR007516:IPR007525; KEGG: cyc:PCC7424_0101 coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein; PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; SPTR: Coenzyme F420 hydrogenase/dehydrogenase beta subunit-like.
       0.527
AFZ08139.1
Leucine-rich repeat-containing protein; InterPro IPR003591:IPR001611; KEGG: npu:Npun_F4961 leucine-rich repeat-containing protein; PFAM: Leucine-rich repeat; SPTR: Leucine Rich Repeat domain protein.
       0.505
AFZ08136.1
PFAM: SPFH domain / Band 7 family; COGs: COG0330 Membrane protease subunits stomatin/prohibitin homologs; InterPro IPR001107; KEGG: npu:Npun_F0409 band 7 protein; PFAM: Band 7 protein; SMART: Band 7 protein; SPTR: Band 7 protein.
 
 
  0.453
AFZ08140.1
Leucine-rich repeat-containing protein; InterPro IPR003591:IPR001611; KEGG: npu:Npun_F4961 leucine-rich repeat-containing protein; PFAM: Leucine-rich repeat; SPTR: Leucine Rich Repeat domain protein.
       0.436
AFZ05638.1
PFAM: Ras family; TIGRFAM: small GTP-binding protein domain; COGs: COG1100 GTPase SAR1 and related small G protein; InterPro IPR013684:IPR005225:IPR003577:IPR003579; KEGG: cyt:cce_4708 putative small GTP-binding protein; PFAM: Mitochondrial Rho-like; SMART: Ras small GTPase, Rab type; Ras small GTPase, Ras type; SPTR: Small GTP-binding protein; TIGRFAM: Small GTP-binding protein.
    
  0.417
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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