STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ08142.1PFAM: Acetyltransferase (GNAT) family; InterPro IPR000182; KEGG: npu:Npun_F5089 GCN5-related N-acetyltransferase; PFAM: GCN5-related N-acetyltransferase (GNAT) domain; SPTR: GCN5-related N-acetyltransferase. (153 aa)    
Predicted Functional Partners:
AFZ08141.1
Protein of unknown function DUF2237; PFAM: Uncharacterized protein conserved in bacteria (DUF2237); COGs: COG3651 conserved hypothetical protein; InterPro IPR018714; KEGG: amr:AM1_3735 hypothetical protein; PFAM: Protein of unknown function DUF2237; SPTR: Putative uncharacterized protein.
       0.618
AFZ05701.1
UPF0176 protein yceA; PFAM: Rhodanese-like domain; COGs: COG1054 sulfurtransferase; HAMAP: Uncharacterised protein family UPF0176; InterPro IPR001763:IPR020936; KEGG: pol:Bpro_2937 rhodanese-like protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; SPTR: UPF0176 protein OSCI_2480005; Belongs to the UPF0176 family.
 
      0.505
AFZ08143.1
Chloramphenicol O-acetyltransferase; PFAM: Bacterial transferase hexapeptide (three repeats); COGs: COG0110 Acetyltransferase (isoleucine patch superfamily); KEGG: syn:sll1900 acetyltransferase; PRIAM: Chloramphenicol O-acetyltransferase; SPTR: Streptogramin A acetyltransferase.
 
     0.446
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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