STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ08710.1PFAM: Surface antigen variable number repeat; Surface antigen; POTRA domain, ShlB-type; TIGRFAM: chloroplast envelope protein translocase, IAP75 family; COGs: COG4775 Outer membrane protein/protective antigen OMA87; InterPro IPR010827:IPR000184; KEGG: ter:Tery_4653 surface antigen (D15); PFAM: Bacterial surface antigen (D15); Surface antigen variable number; SPTR: Surface antigen variable number. (794 aa)    
Predicted Functional Partners:
AFZ09116.1
InterPro IPR002372:IPR018391; KEGG: ter:Tery_0864 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat; SPTR: Putative uncharacterized protein.
  
 
 0.900
lpxA
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.895
AFZ06418.1
PFAM: Transglycosylase SLT domain; COGs: COG0741 Soluble lytic murein transglycosylase and related regulatory protein (some contain LysM/invasin domains); InterPro IPR008258; KEGG: ter:Tery_2092 lytic transglycosylase, catalytic; PFAM: Lytic transglycosylase-like, catalytic; SPTR: Lytic transglycosylase, catalytic.
  
 
 0.885
lpxC
UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family.
 
   
 0.872
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.858
AFZ08715.1
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.791
AFZ08810.1
Putative lipoprotein; PFAM: Protein of unknown function (DUF3574); KEGG: pct:PC1_3333 putative lipoprotein; SPTR: Putative lipoprotein.
    
 
 0.782
AFZ04695.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: ana:alr4069 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Putative uncharacterized protein.
 
     0.781
AFZ04694.1
Sulfate-transporting ATPase; PFAM: ABC transporter; COGs: COG1137 ABC-type (unclassified) transport system ATPase component; InterPro IPR003439:IPR003593; KEGG: ava:Ava_1638 ABC transporter-like; PFAM: ABC transporter-like; PRIAM: Sulfate-transporting ATPase; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter-like protein.
 
  
 0.767
AFZ09657.1
Resolvase RNase H domain protein fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.762
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.