STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ08804.1PFAM: Rho termination factor, N-terminal domain; COGs: COG3330 conserved hypothetical protein; InterPro IPR011112; KEGG: ava:Ava_4273 Rho termination factor-like; PFAM: Rho termination factor, N-terminal; SMART: Rho termination factor, N-terminal; SPTR: Putative uncharacterized protein. (453 aa)    
Predicted Functional Partners:
AFZ05719.1
PFAM: Domain of unknown function (DUF1957); Glycosyl hydrolase family 57; COGs: COG1543 conserved hypothetical protein; InterPro IPR004300:IPR015293; KEGG: tel:tll1974 hypothetical protein; PFAM: Domain of unknown function DUF1957; Glycoside hydrolase, family 57, N-terminal; SPTR: Glycoside hydrolase family protein.
 
     0.767
AFZ05061.1
PFAM: Protein of unknown function (DUF3288); KEGG: ter:Tery_3752 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.720
ndhO
NAD(P)H-quinone oxidoreductase subunit O; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.719
AFZ08365.1
KEGG: ter:Tery_0216 AbrB family transcriptional regulator; SPTR: Transcriptional regulator, AbrB family.
  
     0.716
AFZ10194.1
KEGG: ter:Tery_1859 transcriptional regulator AbrB; SPTR: Transcriptional regulator AbrB.
  
     0.715
AFZ08377.1
KEGG: ava:Ava_2889 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.714
AFZ09417.1
PFAM: CO2 hydration protein (ChpXY); TIGRFAM: CO2 hydration protein; InterPro IPR010220; KEGG: cyj:Cyan7822_2890 CO2 hydration protein; PFAM: CO2 hydration; SPTR: CO2 hydration protein; TIGRFAM: CO2 hydration.
  
     0.704
AFZ06725.1
Putative GAF sensor protein; PFAM: GAF domain; COGs: COG2203 FOG: GAF domain; InterPro IPR003018; KEGG: cyn:Cyan7425_1370 signal transduction histidine kinase; PFAM: GAF; SMART: GAF; SPTR: Signal transduction histidine kinase.
  
     0.700
AFZ06369.1
KEGG: mar:MAE_07070 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.691
AFZ08422.1
KEGG: mar:MAE_31400 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.686
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.