STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ09452.1PFAM: Carbohydrate-selective porin, OprB family; S-layer homology domain; InterPro IPR001119:IPR007049; KEGG: npu:Npun_F2347 carbohydrate-selective porin OprB; PFAM: Carbohydrate-selective porin OprB; S-layer homology domain; SPTR: Carbohydrate-selective porin OprB; TC 1.B.23; Belongs to the OprB family. (706 aa)    
Predicted Functional Partners:
AFZ09657.1
Resolvase RNase H domain protein fold protein; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF nuclease family.
  
     0.671
AFZ05108.1
PFAM: CRISPR-associated protein; KEGG: cyn:Cyan7425_5328 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.636
AFZ08491.1
PFAM: Protein of unknown function (DUF2839); KEGG: cyn:Cyan7425_0942 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.607
AFZ06902.1
KEGG: cyh:Cyan8802_2290 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.596
AFZ05110.1
CRISPR-associated protein, Cmr4 family; PFAM: RAMP superfamily; TIGRFAM: CRISPR type III-B/RAMP module RAMP protein Cmr4; COGs: COG1336 Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily); InterPro IPR005537; KEGG: cyj:Cyan7822_5621 hypothetical protein; PFAM: Protein of unknown function DUF324; SPTR: Putative uncharacterized protein.
  
     0.582
AFZ07251.1
PFAM: Protein of unknown function (DUF3038); KEGG: npu:Npun_F0108 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.581
AFZ04695.1
PFAM: Predicted permease YjgP/YjgQ family; COGs: COG0795 permease; InterPro IPR005495; KEGG: ana:alr4069 hypothetical protein; PFAM: Permease YjgP/YjgQ, predicted; SPTR: Putative uncharacterized protein.
  
     0.579
AFZ09673.1
KEGG: npu:Npun_R3911 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.579
AFZ08365.1
KEGG: ter:Tery_0216 AbrB family transcriptional regulator; SPTR: Transcriptional regulator, AbrB family.
  
     0.565
AFZ09658.1
PFAM: Protein of unknown function (DUF3084); COGs: COG4372 Uncharacterized protein with the myosin-like domain; KEGG: npu:Npun_F5512 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.549
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.