STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ09543.1Farnesyltranstransferase; PFAM: Polyprenyl synthetase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR000092; KEGG: ter:Tery_4173 farnesyl-diphosphate synthase; PFAM: Polyprenyl synthetase; PRIAM: Farnesyltranstransferase; SPTR: Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. (308 aa)    
Predicted Functional Partners:
AFZ07075.1
Undecaprenyl pyrophosphate synthetase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
 
 0.969
ispH
4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family.
 
 
 0.944
AFZ10073.1
PFAM: Squalene/phytoene synthase; COGs: COG1562 Phytoene/squalene synthetase; InterPro IPR002060; KEGG: ter:Tery_4010 phytoene synthase; PFAM: Squalene/phytoene synthase; PRIAM: Phytoene synthase; SPTR: Phytoene synthase.
  
 0.929
AFZ08757.1
PFAM: Polyprenyl synthetase; TIGRFAM: solanesyl diphosphate synthase; COGs: COG0142 Geranylgeranyl pyrophosphate synthase; InterPro IPR014120:IPR000092; KEGG: npu:Npun_R1834 polyprenyl synthetase; PFAM: Polyprenyl synthetase; PRIAM: Trans-hexaprenyltranstransferase; SPTR: Trans-hexaprenyltranstransferase; TIGRFAM: Solanesyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
  
 
0.918
AFZ09938.1
Geranylgeranyl reductase; PFAM: FAD binding domain; TIGRFAM: geranylgeranyl reductase; geranylgeranyl reductase family; COGs: COG0644 Dehydrogenase (flavoprotein); InterPro IPR010253:IPR011774:IPR011777:IPR013027; KEGG: ava:Ava_1497 geranylgeranyl reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Geranylgeranyl reductase; TIGRFAM: Geranylgeranyl reductase, plant/cyanobacteria; Geranylgeranyl reductase; Geranylgeranyl reductase, plant/prokaryotic.
  
 0.916
fni
Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP).
  
 
 0.913
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
  
 0.814
AFZ09544.1
Acid phosphatase/vanadium-dependent haloperoxidase related protein; PFAM: Divergent PAP2 family; COGs: COG1963 conserved hypothetical protein; InterPro IPR003832; KEGG: npu:Npun_F3771 acid phosphatase/vanadium-dependent haloperoxidase related; PFAM: Acid phosphatase/vanadium-dependent haloperoxidase-related; SPTR: Acid phosphatase/vanadium-dependent haloperoxidase related.
       0.759
rnj
Ribocuclease J; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
  
    0.632
AFZ05401.1
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
    0.578
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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