STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
cbbLRibulose 1,5-bisphosphate carboxylase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site. (476 aa)    
Predicted Functional Partners:
AFZ10013.1
PFAM: Ribulose bisphosphate carboxylase, small chain; COGs: COG4451 Ribulose bisphosphate carboxylase small subunit; InterPro IPR000894; KEGG: ter:Tery_4408 ribulose 1,5-bisphosphate carboxylase small subunit; PFAM: Ribulose bisphosphate carboxylase, small chain; PRIAM: Ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain; SPTR: Ribulose 1,5-bisphosphate carboxylase small subunit.
 
 0.999
AFZ09425.1
Carbonate dehydratase; PFAM: Ribulose bisphosphate carboxylase, small chain; Bacterial transferase hexapeptide (three repeats); COGs: COG0663 Carbonic anhydrase/acetyltransferase isoleucine patch superfamily; InterPro IPR001451:IPR000894; KEGG: ana:all0865 carbon dioxide concentrating mechanism protein; PFAM: Ribulose bisphosphate carboxylase, small chain; Bacterial transferase hexapeptide repeat; PRIAM: Carbonate dehydratase; SMART: Ribulose bisphosphate carboxylase, small chain; SPTR: Carbonate dehydratase.
  
 
 0.988
AFZ10110.1
PFAM: Phosphoribulokinase / Uridine kinase family; COGs: COG0572 Uridine kinase; InterPro IPR006083; KEGG: ter:Tery_1845 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Phosphoribulokinase; SPTR: Phosphoribulokinase.
 
  
 0.975
AFZ10062.1
PFAM: Phosphoribulokinase / Uridine kinase family; COGs: COG0572 Uridine kinase; InterPro IPR006083; KEGG: ava:Ava_0781 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase; PRIAM: Phosphoribulokinase; SPTR: Phosphoribulokinase.
 
  
 0.960
AFZ09797.1
KEGG: ter:Tery_3970 hypothetical protein; SPTR: Putative uncharacterized protein.
    
 
 0.924
pgk
PFAM: Phosphoglycerate kinase; COGs: COG0126 3-phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; InterPro IPR001576; KEGG: ava:Ava_0772 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; PRIAM: Phosphoglycerate kinase; SPTR: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.922
AFZ10012.1
PFAM: RbcX protein; InterPro IPR003435; KEGG: npu:Npun_F4196 chaperonin family protein RbcX; PFAM: Chaperonin-like RbcX; SPTR: RbcX.
   
 
 0.912
AFZ04817.1
PFAM: haloacid dehalogenase-like hydrolase; COGs: COG0546 phosphatase; InterPro IPR005834; KEGG: cyn:Cyan7425_0848 haloacid dehalogenase domain protein hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Putative Haloacid dehalogenase-like hydrolase.
     
 0.905
AFZ05545.1
HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED; haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase; COGs: COG0546 phosphatase; InterPro IPR005834:IPR006439; KEGG: ter:Tery_4662 HAD family hydrolase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: HAD family hydrolase; TIGRFAM: HAD-sup [...]
     
 0.905
AFZ07521.1
HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: haloacid dehalogenase-like hydrolase; TIGRFAM: haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E; COGs: COG0546 phosphatase; InterPro IPR006439:IPR005834; KEGG: gox:GOX0579 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Phosphoglycolate phosphatase; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1.
     
 0.905
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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