STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFZ10347.1PFAM: Protein of unknown function (DUF433); COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: rmr:Rmar_1773 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: Putative uncharacterized protein. (66 aa)    
Predicted Functional Partners:
AFZ04931.1
PFAM: Protein of unknown function (DUF433); COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: rmr:Rmar_1887 protein of unknown function DUF433; PFAM: Protein of unknown function DUF433; SPTR: Putative uncharacterized protein.
  
     0.774
AFZ10348.1
KEGG: cyp:PCC8801_1185 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.773
AFZ10349.1
PFAM: Protein of unknown function (DUF2281); InterPro IPR018739; KEGG: gvi:gll0228 hypothetical protein; PFAM: Protein of unknown function DUF2281; SPTR: Putative uncharacterized protein.
       0.773
uvrB
Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...]
       0.714
AFZ07157.1
PFAM: Protein of unknown function (DUF433); COGs: COG2442 conserved hypothetical protein; InterPro IPR007367; KEGG: mar:MAE_56090 hypothetical protein; PFAM: Protein of unknown function DUF433; SPTR: Putative uncharacterized protein.
  
     0.641
AFZ10345.1
KEGG: npu:Npun_F0468 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.472
AFZ05164.1
COGs: COG4634 conserved hypothetical protein; KEGG: rca:Rcas_0081 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.468
Your Current Organism:
Oscillatoria nigroviridis
NCBI taxonomy Id: 179408
Other names: O. nigro-viridis PCC 7112, Oscillatoria nigro-viridis PCC 7112, Oscillatoria sp. PCC 7112
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.