STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ornOligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (209 aa)    
Predicted Functional Partners:
rph
Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.776
CDQ43808.1
Phosphoesterase domain-containing protein.
     
 0.774
CDQ42289.1
tRNA adenylyltransferase; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.751
CDQ46667.1
ATPase.
       0.662
hrpA
ATP-dependent helicase HrpA.
 
  
 0.653
rnj
Beta-lactamase domain-containing protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
      
 0.613
CDQ44299.1
Inositol monophosphatase.
      
 0.604
pnp
Polynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
      
 0.601
aceE
Pyruvate dehydrogenase subunit E1; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
     0.555
CDQ46692.1
Single stranded DNA-binding protein.
 
 
 0.535
Your Current Organism:
Mycolicibacterium neoaurum
NCBI taxonomy Id: 1795
Other names: ATCC 25795, CCUG 37665, CIP 105387, DSM 44074, HAMBI 2273, JCM 6365, M. neoaurum, Mycobacterium neoaurum, Mycobacterium sp. ATCC 23071, Mycobacterium sp. ATCC 25798, Mycobacterium sp. ATCC 25799, Mycobacterium sp. ATCC 25800, Mycobacterium sp. ATCC 25803, Mycobacterium sp. ATCC 27277, NCTC 10818
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