STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ47358.1RDD domain-containing protein. (325 aa)    
Predicted Functional Partners:
CDQ47356.1
Mce-family protein mce1f.
 
     0.913
CDQ47355.1
Virulence factor Mce family protein.
 
     0.865
CDQ47353.1
Mce-family protein mce1f.
 
     0.832
CDQ47359.1
MCE associated protein.
  
  
 0.807
CDQ47360.1
Mce associated membrane protein.
  
  
 0.807
CDQ47357.1
Mce associated membrane protein.
  
    0.802
CDQ47361.1
Putative membrane protein.
 
     0.780
CDQ47354.1
Virulence factor Mce family protein.
 
     0.740
CDQ45648.1
Pra.
  
     0.725
CDQ42878.1
Immunogenic protein MPB64/MPT64.
 
   
 0.721
Your Current Organism:
Mycolicibacterium neoaurum
NCBI taxonomy Id: 1795
Other names: ATCC 25795, CCUG 37665, CIP 105387, DSM 44074, HAMBI 2273, JCM 6365, M. neoaurum, Mycobacterium neoaurum, Mycobacterium sp. ATCC 23071, Mycobacterium sp. ATCC 25798, Mycobacterium sp. ATCC 25799, Mycobacterium sp. ATCC 25800, Mycobacterium sp. ATCC 25803, Mycobacterium sp. ATCC 27277, NCTC 10818
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