STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLO51633.1Strictosidine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)    
Predicted Functional Partners:
gntK
Gluconate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.577
ydbD
Manganese catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
  0.494
pbuG
MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.485
tpa_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
       0.470
qcrC
Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.470
srpA
Catalase; Has an organic peroxide-dependent peroxidase activity. Belongs to the catalase family.
   
 
 0.463
katE_2
Catalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.463
KLO48509.1
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.449
KLO51632.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.447
KLO51229.1
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.443
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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