STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
choACholesterol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (539 aa)    
Predicted Functional Partners:
choD
Cholesterol oxidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.878
qcrC
Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.874
alkB1_3
Alkane 1-monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.804
KLO52276.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.782
KLO52244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.781
KLO53266.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.756
KLO51133.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.747
KLO51631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.747
KLO52502.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.747
KLO50905.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.717
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.