STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glcA1,3-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)    
Predicted Functional Partners:
cenA
1,4-beta-glucanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase family 6.
 
  
 0.740
KLO53488.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.721
KLO54889.1
1,4-beta-xylanase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.719
erp
Exported repetitive protein Erp; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.704
snm
Secretion protein EccD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.622
KLO50886.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.611
KLO53152.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.607
KLO52361.1
Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.545
KLO54788.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.541
rsbW_2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.535
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.