Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KLO50228.1 | gdh | ABW05_00535 | ABW05_13830 | Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.957 |
| KLO50228.1 | gltB_2 | ABW05_00535 | ABW05_02410 | Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.722 |
| KLO50228.1 | gltB_3 | ABW05_00535 | ABW05_17280 | Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.722 |
| gcvP | gdh | ABW05_00555 | ABW05_13830 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.888 |
| gcvP | gdhA | ABW05_00555 | ABW05_22800 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.923 |
| gcvP | glnA_1 | ABW05_00555 | ABW05_27730 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.905 |
| gcvP | glnA_2 | ABW05_00555 | ABW05_27700 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.934 |
| gcvP | glnA_3 | ABW05_00555 | ABW05_05070 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.905 |
| gcvP | glnT_1 | ABW05_00555 | ABW05_09525 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.894 |
| gcvP | glnT_2 | ABW05_00555 | ABW05_18240 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.905 |
| gcvP | gltB_2 | ABW05_00555 | ABW05_02410 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.977 |
| gcvP | gltB_3 | ABW05_00555 | ABW05_17280 | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.977 |
| gdh | KLO50228.1 | ABW05_13830 | ABW05_00535 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.957 |
| gdh | gcvP | ABW05_13830 | ABW05_00555 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. | 0.888 |
| gdh | gdhA | ABW05_13830 | ABW05_22800 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.932 |
| gdh | glnA_1 | ABW05_13830 | ABW05_27730 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.886 |
| gdh | glnA_2 | ABW05_13830 | ABW05_27700 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.903 |
| gdh | glnA_3 | ABW05_13830 | ABW05_05070 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.888 |
| gdh | glnT_1 | ABW05_13830 | ABW05_09525 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamine synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.886 |
| gdh | glnT_2 | ABW05_13830 | ABW05_18240 | NAD-glutamate dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Glutamate--ammonia ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutamine synthetase family. | 0.886 |
page 1 of 5