STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLO52639.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)    
Predicted Functional Partners:
prrB_3
ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.637
prrA_2
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.612
mmpL11
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.595
isdG
Monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.540
lytM_2
Peptidase M23; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.482
KLO52636.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.482
tap_1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
 0.481
KLO52638.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
0.467
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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