STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smtAHypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (225 aa)    
Predicted Functional Partners:
gcvP
Glycine dehydrogenase; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.611
KLO52787.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.594
KLO51484.1
fatty-acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.568
KLO52786.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.506
KLO53031.1
Phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Catalyzes the formation of decaprenylphosphoryl-5-phosphoribose from phosphoribose diphosphate and decaprenyl phosphate; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UbiA prenyltransferase family.
 
 
  0.490
tehB_1
Methyltransferase type 12; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
0.488
KLO54558.1
Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
     0.442
ubiE_3
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
  0.427
tam
Trans-aconitate methyltransferase; Catalyzes the formation of (E)-3-(methoxycarbonyl)pent-2-enedioate and S-adenosyl-L-homocysteine from S-adenosyl-L-methionine and trans-aconitate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.422
tehB_2
SAM-dependent methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 
0.420
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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