STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KLO52821.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (248 aa)    
Predicted Functional Partners:
sigM_3
Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription: in Mycobacterium bovis this protein has been shown to be active at high temperatures and during stationary phase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sigma-70 factor family. ECF subfamily.
   
   0.859
KLO52533.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.732
KLO53305.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.730
KLO50340.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.726
KLO54954.1
Methyltransferase type 11; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.689
eccE1_1
Peptidase M13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.687
KLO50886.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.686
KLO53760.1
Antigen; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.683
lppL
Lipoprotein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
trxB_3
Thioredoxin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.673
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.