STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pkn1_1Sulfatase-modifying factor 1; Derived by automated computational analysis using gene prediction method: Protein Homology. (298 aa)    
Predicted Functional Partners:
betC_1
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.971
atsA_1
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.942
KLO54027.1
Acid phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.896
aslA
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.871
atsA_2
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.839
atsA_3
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.838
atsA_4
Arylsulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.832
betC_2
Sulfatase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.802
egtD
histidyl-tRNA synthetase; Catalyzes the SAM-dependent triple methylation of the alpha- amino group of histidine to form hercynine, a step in the biosynthesis pathway of ergothioneine; Belongs to the methyltransferase superfamily. EgtD family.
  
 
 0.772
egtC_2
Amidohydrolase; Catalyzes the hydrolysis of the gamma-glutamyl amide bond of hercynyl-gamma-L-glutamyl-L-cysteine sulfoxide to produce hercynylcysteine sulfoxide, a step in the biosynthesis pathway of ergothioneine.
  
 
 0.631
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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