STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddn_2Nitroreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)    
Predicted Functional Partners:
hit
HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.877
KLO54320.1
Glyoxalase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.830
KLO50374.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.756
KLO54876.1
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
KLO53453.1
NADP oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.747
fgd_5
Glucose-6-phosphate dehydrogenase; Catalyzes the coenzyme F420-dependent oxidation of glucose 6- phosphate (G6P) to 6-phosphogluconolactone.
  
     0.742
fgd1_7
F420-dependent oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.720
cofD
2-phospho-L-lactate transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.715
fgd_4
5,10-methylene tetrahydromethanopterin reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.696
rutA_5
Luciferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.694
Your Current Organism:
Mycolicibacterium senegalense
NCBI taxonomy Id: 1796
Other names: ATCC 35796, CCUG 21001, CIP 104941, DSM 43656, JCM 15467, Mycobacterium farcinogenes subsp. senegalense, Mycobacterium senegalense, NCTC 10956, strain IEMVT 378
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