STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pyrDDihydroorotate dehydrogenase; Catalyzes the conversion of dihydroorotate to orotate. (301 aa)    
Predicted Functional Partners:
A4V02_07015
Dihydroorotate dehydrogenase electron transfer subunit.
 0.999
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
 
 0.995
A4V02_04885
Dihydroorotase.
 
 0.995
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
 
  
 0.957
pyrF
Orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
  
  
 0.947
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
  
  
 0.947
A4V02_02100
Glutamate synthase (NADPH), homotetrameric.
 
 
 0.944
A4V02_09430
Pyridine nucleotide-disulfide oxidoreductase.
 
 
 0.944
A4V02_02095
Ferredoxin-NADP reductase.
 
 
 0.943
A4V02_07590
Glutamate synthase.
 
 
 0.937
Your Current Organism:
Muribaculum intestinale
NCBI taxonomy Id: 1796646
Other names: DSM 28989, KCTC 15537, M. intestinale, Muribaculaceae bacterium DSM 100739, Muribaculaceae bacterium DSM 100746, Muribaculum intestinale Lagkouvardos et al. 2016, Parabacteroides sp. YL27, Porphyromonadaceae bacterium YL27, strain YL27
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