STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4V02_07535RagB/SusD family nutrient uptake outer membrane protein. (552 aa)    
Predicted Functional Partners:
atpE
ATP synthase subunit c; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 0.986
A4V02_07540
SusC/RagA family protein.
 
     0.936
A4V02_07635
SusC/RagA family TonB-linked outer membrane protein.
  
     0.761
A4V02_07640
RagB/SusD family nutrient uptake outer membrane protein.
  
     0.757
A4V02_01470
RagB/SusD family nutrient uptake outer membrane protein.
  
     0.750
A4V02_13195
RagB/SusD family nutrient uptake outer membrane protein.
  
     0.749
A4V02_01475
Uncharacterized protein.
 
     0.747
A4V02_13200
SusC/RagA family TonB-linked outer membrane protein.
  
     0.746
A4V02_05795
Uncharacterized protein.
 
     0.733
A4V02_09820
SusC/RagA family protein.
  
     0.733
Your Current Organism:
Muribaculum intestinale
NCBI taxonomy Id: 1796646
Other names: DSM 28989, KCTC 15537, M. intestinale, Muribaculaceae bacterium DSM 100739, Muribaculaceae bacterium DSM 100746, Muribaculum intestinale Lagkouvardos et al. 2016, Parabacteroides sp. YL27, Porphyromonadaceae bacterium YL27, strain YL27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.