STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4V02_07855Hemerythrin domain-containing protein; Di-iron-containing protein involved in the repair of iron- sulfur clusters; Belongs to the RIC family. (267 aa)    
Predicted Functional Partners:
A4V02_07860
LuxR family transcriptional regulator.
     0.899
A4V02_08970
DUF4924 domain-containing protein.
  
     0.709
valS
Valine--tRNA ligase; Catalyzes the attachment of valine to tRNA(Val). As ValRS can inadvertently accommodate and process structurally similar amino acids such as threonine, to avoid such errors, it has a 'posttransfer' editing activity that hydrolyzes mischarged Thr-tRNA(Val) in a tRNA- dependent manner; Belongs to the class-I aminoacyl-tRNA synthetase family. ValS type 1 subfamily.
       0.686
A4V02_08415
TPR_REGION domain-containing protein.
  
     0.672
A4V02_08665
Outer membrane protein assembly factor.
  
     0.636
A4V02_01480
Uncharacterized protein.
  
     0.622
A4V02_08770
Uncharacterized protein.
  
     0.608
A4V02_04715
Uncharacterized protein.
  
     0.581
A4V02_02630
DUF490 domain-containing protein.
  
     0.556
A4V02_02645
DUF4492 domain-containing protein.
  
     0.546
Your Current Organism:
Muribaculum intestinale
NCBI taxonomy Id: 1796646
Other names: DSM 28989, KCTC 15537, M. intestinale, Muribaculaceae bacterium DSM 100739, Muribaculaceae bacterium DSM 100746, Muribaculum intestinale Lagkouvardos et al. 2016, Parabacteroides sp. YL27, Porphyromonadaceae bacterium YL27, strain YL27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.