STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A4V02_13700Uncharacterized protein. (127 aa)    
Predicted Functional Partners:
A4V02_03460
Uncharacterized protein.
  
 
 0.900
A4V02_03455
Sigma-54-dependent Fis family transcriptional regulator.
  
 
 0.806
A4V02_07630
Uncharacterized protein.
  
 
 0.768
A4V02_07625
Peripla_BP_4 domain-containing protein.
  
 
 0.759
A4V02_03465
DUF4375 domain-containing protein.
       0.692
A4V02_03470
Uncharacterized protein.
       0.649
A4V02_01870
Hybrid sensor histidine kinase/response regulator.
  
 
 0.567
A4V02_03475
Uncharacterized protein.
       0.496
A4V02_04665
Carb-bd_dom_fam9 domain-containing protein.
  
 
 0.468
A4V02_05110
Carb-bd_dom_fam9 domain-containing protein.
  
 
 0.468
Your Current Organism:
Muribaculum intestinale
NCBI taxonomy Id: 1796646
Other names: DSM 28989, KCTC 15537, M. intestinale, Muribaculaceae bacterium DSM 100739, Muribaculaceae bacterium DSM 100746, Muribaculum intestinale Lagkouvardos et al. 2016, Parabacteroides sp. YL27, Porphyromonadaceae bacterium YL27, strain YL27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.